RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g55300.1 View Network Show in Genome Browser |
| Other Names | Os01g0757800 |
| Description | DNA-directed polymerase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 31830297-31836005 Nucleotide Length: 1929 |
| Protein-coding | LOC_Os01g55300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48280 LOC_Os01g15260 LOC_Os01g05900 LOC_Os01g05630 LOC_Os01g05610 LOC_Os01g06010 LOC_Os01g05970 LOC_Os01g33110 |
| Downstream Genes | LOC_Os03g63940 LOC_Os02g56130 LOC_Os05g45420 LOC_Os02g34750 LOC_Os06g47580 LOC_Os08g37800 LOC_Os03g19280 LOC_Os03g17980 LOC_Os03g13800 LOC_Os09g12570 LOC_Os01g62230 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2275a osa-miR2275b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn01100 rn00230 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g55300.1 |
| Rice Genome Annotation | LOC_Os01g55300.1 |
| Ricechip | LOC_Os01g55300.1 |
| KEGG | osa:4325305 dosa:Os01t0757800-01 |
| Entrez-Gene | 4325305 |