RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g55870.1 View Network Show in Genome Browser |
| Other Names | Os01g0764400 |
| Description | chorismate mutase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 32171722-32175018 Nucleotide Length: 942 |
| Protein-coding | LOC_Os01g55870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g19840 LOC_Os01g54860 LOC_Os01g27160 LOC_Os01g04260 LOC_Os01g44130 LOC_Os01g34200 LOC_Os01g27150 LOC_Os01g52490 |
| Downstream Genes | LOC_Os05g28750 LOC_Os11g39670 LOC_Os10g42299 LOC_Os01g59140 LOC_Os09g26180 LOC_Os02g37870 LOC_Os01g67134 LOC_Os03g11120 LOC_Os02g07040 LOC_Os11g29400 LOC_Os06g02144 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | PHESYN |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g55870.1 |
| Rice Genome Annotation | LOC_Os01g55870.1 |
| Ricechip | LOC_Os01g55870.1 |
| KEGG | osa:4326889 dosa:Os01t0764400-01 |
| Entrez-Gene | 4326889 |