RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g56550.3 View Network Show in Genome Browser |
| Other Names | Os01g0772200 |
| Description | transcription initiation factor IIF beta subunit, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 32598081-32601810 Nucleotide Length: 597 |
| Protein-coding | LOC_Os01g56550 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g23630 LOC_Os01g36570 LOC_Os01g48810 LOC_Os01g08970 LOC_Os01g43170 LOC_Os01g34614 LOC_Os01g49680 LOC_Os01g32750 LOC_Os01g46020 LOC_Os01g15860 LOC_Os01g47750 More.. |
| Downstream Genes | LOC_Os10g10990 LOC_Os09g02284 LOC_Os01g59140 LOC_Os05g05860 LOC_Os03g01230 LOC_Os07g07610 LOC_Os02g02510 LOC_Os12g37370 LOC_Os03g44484 LOC_Os05g33240 LOC_Os11g08940 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g56550.3 |
| Rice Genome Annotation | LOC_Os01g56550.3 |
| Ricechip | LOC_Os01g56550.3 |
| KEGG | osa:9270266 dosa:Os01t0772200-02 |
| Entrez-Gene | 9270266 |