RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g56620.1 View Network Show in Genome Browser |
| Other Names | Os01g0773000 |
| Description | pseudouridylate synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 32660700-32667425 Nucleotide Length: 2160 |
| Protein-coding | LOC_Os01g56620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g43020 LOC_Os01g27730 LOC_Os01g51280 LOC_Os01g33050 LOC_Os01g46570 LOC_Os01g52490 LOC_Os01g33030 LOC_Os01g55820 LOC_Os01g08770 LOC_Os01g04730 LOC_Os01g54870 More.. |
| Downstream Genes | LOC_Os12g03822 LOC_Os11g03990 LOC_Os08g23730 LOC_Os07g25440 LOC_Os03g25450 LOC_Os07g30150 LOC_Os10g10434 LOC_Os12g36950 LOC_Os09g18320 LOC_Os02g50350 LOC_Os02g45660 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g56620.1 |
| Rice Genome Annotation | LOC_Os01g56620.1 |
| Ricechip | LOC_Os01g56620.1 |
| KEGG | osa:4324714 dosa:Os01t0773000-01 |
| Entrez-Gene | 4324714 |