RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g56940.1 View Network Show in Genome Browser |
| Other Names | Os01g0777300 |
| Description | flap endonuclease, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 32893379-32899784 Nucleotide Length: 2511 |
| Protein-coding | LOC_Os01g56940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g39630 LOC_Os01g25610 LOC_Os01g10820 LOC_Os01g48770 LOC_Os01g16190 LOC_Os01g17330 LOC_Os01g33050 LOC_Os01g36390 LOC_Os01g04730 LOC_Os01g32800 LOC_Os01g21180 More.. |
| Downstream Genes | LOC_Os08g01130 LOC_Os05g46270 LOC_Os03g15033 LOC_Os03g12610 LOC_Os05g19270 LOC_Os01g72880 LOC_Os04g58630 LOC_Os06g07210 LOC_Os09g24220 LOC_Os07g07709 LOC_Os03g58050 More.. |
| Reference | |
|---|---|
| PubMed | 23161853 18231866 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g56940.1 |
| Rice Genome Annotation | LOC_Os01g56940.1 |
| Ricechip | LOC_Os01g56940.1 |
| KEGG | osa:4327899 dosa:Os01t0777300-00 |
| Entrez-Gene | 4327899 |