RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g57210.1 View Network Show in Genome Browser |
| Other Names | Os01g0780400 |
| Description | katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 33050635-33058497 Nucleotide Length: 2517 |
| Protein-coding | LOC_Os01g57210 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g56140 LOC_Os01g53600 LOC_Os01g38359 LOC_Os01g45439 |
| Downstream Genes | LOC_Os04g20270 LOC_Os06g31100 LOC_Os06g04970 LOC_Os02g28980 LOC_Os06g30680 LOC_Os02g34630 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5534a |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g57210.1 |
| Rice Genome Annotation | LOC_Os01g57210.1 |
| Ricechip | LOC_Os01g57210.1 |
| KEGG | osa:4327835 dosa:Os01t0780400-02 |
| Entrez-Gene | 4327835 |