RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g57260.1 View Network Show in Genome Browser |
| Other Names | Os01g0781000 |
| Description | vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 33089182-33090312 Nucleotide Length: 642 |
| Protein-coding | LOC_Os01g57260 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005768 | endosome | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g46932 LOC_Os01g15039 LOC_Os01g48980 LOC_Os01g43940 LOC_Os01g04840 |
| Downstream Genes | LOC_Os02g58640 LOC_Os03g08770 LOC_Os03g37580 LOC_Os02g38300 LOC_Os09g39500 LOC_Os03g13170 LOC_Os04g55210 LOC_Os06g03540 LOC_Os06g03560 LOC_Os06g03700 LOC_Os08g25200 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g57260.1 |
| Rice Genome Annotation | LOC_Os01g57260.1 |
| Ricechip | LOC_Os01g57260.1 |
| KEGG | osa:4327840 dosa:Os01t0781000-01 |
| Entrez-Gene | 4327840 |