RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g59920.1 View Network Show in Genome Browser |
| Other Names | Os01g0814800 |
| Description | cysteine synthase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 34647037-34650771 Nucleotide Length: 1179 |
| Protein-coding | LOC_Os01g59920 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g46980 LOC_Os01g37837 LOC_Os01g55820 LOC_Os01g12260 LOC_Os01g59150 LOC_Os01g18050 LOC_Os01g01302 LOC_Os01g51380 LOC_Os01g53900 LOC_Os01g14950 LOC_Os01g59730 More.. |
| Downstream Genes | LOC_Os08g04180 LOC_Os04g46930 LOC_Os04g54390 LOC_Os06g42560 LOC_Os05g47640 LOC_Os06g07960 LOC_Os06g07860 LOC_Os03g50510 LOC_Os06g03780 LOC_Os11g26850 LOC_Os04g54800 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1439 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn00920 rn01100 rn01120 |
| Metacyc Pathways | CYSTSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g59920.1 |
| Rice Genome Annotation | LOC_Os01g59920.1 |
| Ricechip | LOC_Os01g59920.1 |
| KEGG | osa:4327479 dosa:Os01t0814800-01 |
| Entrez-Gene | 4327479 |