RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g61170.1 View Network Show in Genome Browser |
| Other Names | Os01g0827400 |
| Description | prenylated rab acceptor, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 35407930-35408598 Nucleotide Length: 573 |
| Protein-coding | LOC_Os01g61170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g12730 LOC_Os01g08450 LOC_Os01g37800 LOC_Os01g21610 LOC_Os01g40700 LOC_Os01g36229 |
| Downstream Genes | LOC_Os05g34540 LOC_Os05g44050 LOC_Os05g23860 LOC_Os02g43690 LOC_Os12g03990 LOC_Os11g04180 LOC_Os12g43550 LOC_Os03g46390 LOC_Os07g16970 LOC_Os07g31370 LOC_Os03g16900 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 osa-miR3979-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g61170.1 |
| Rice Genome Annotation | LOC_Os01g61170.1 |
| Ricechip | LOC_Os01g61170.1 |
| KEGG | osa:4327523 dosa:Os01t0827400-01 |
| Entrez-Gene | 4327523 |