RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g61780.1 View Network Show in Genome Browser |
| Other Names | Os01g0834200 |
| Description | vacuolar ATP synthase 98 kDa subunit, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 35732665-35743686 Nucleotide Length: 2457 |
| Protein-coding | LOC_Os01g61780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g51380 LOC_Os01g40470 LOC_Os01g46980 LOC_Os01g54580 LOC_Os01g42430 LOC_Os01g12260 LOC_Os01g55820 |
| Downstream Genes | LOC_Os02g07870 LOC_Os06g37180 LOC_Os06g45120 LOC_Os04g55040 LOC_Os05g51530 LOC_Os06g39050 LOC_Os02g11890 LOC_Os10g23090 LOC_Os10g10500 LOC_Os03g57310 LOC_Os03g14690 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5076 |
| Pathways | |
|---|---|
| KEGG Pathways | rn01100 rn00680 rn00190 rn00195 |
| Metacyc Pathways | PWY-6126 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g61780.1 |
| Rice Genome Annotation | LOC_Os01g61780.1 |
| Ricechip | LOC_Os01g61780.1 |
| KEGG | osa:4327412 dosa:Os01t0834200-01 |
| Entrez-Gene | 4327412 |