RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g62420.1 View Network Show in Genome Browser |
| Other Names | Os01g0841600 |
| Description | triosephosphate isomerase, cytosolic, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 36129310-36131617 Nucleotide Length: 768 |
| Protein-coding | LOC_Os01g62420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g58610 LOC_Os01g53900 LOC_Os01g52214 LOC_Os01g52470 LOC_Os01g42800 LOC_Os01g33960 LOC_Os01g43150 LOC_Os01g39260 LOC_Os01g60190 LOC_Os01g39250 LOC_Os01g22990 More.. |
| Downstream Genes | LOC_Os06g45710 LOC_Os05g41640 LOC_Os02g07260 LOC_Os10g30550 LOC_Os02g07490 LOC_Os04g40950 LOC_Os04g38600 LOC_Os03g03720 LOC_Os02g38920 LOC_Os06g40640 LOC_Os01g67860 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00051 rn00562 rn00710 rn01100 rn01110 rn01120 |
| Metacyc Pathways | ANAEROFRUCAT-PWY PWY-1042 CALVIN-PWY PWY-3801 GLYCOLYSIS |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g62420.1 |
| Rice Genome Annotation | LOC_Os01g62420.1 |
| Ricechip | LOC_Os01g62420.1 |
| KEGG | osa:4327400 dosa:Os01t0841600-01 |
| Entrez-Gene | 4327400 |