RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os01g64000.1 View Network Show in Genome Browser
Other Names	Os01g0859300
Description	bZIP transcription factor, putative, expressed
Gene Attributes	Chromosome: Chr1 CDS Coordinates (5'-3'): 37174547-37176550 Nucleotide Length: 1167
Protein-coding	LOC_Os01g64000

Gene Ontology Classification
GO	Name	Type	Code
GO:0008150	biological_process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009719	response to endogenous stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g11350 LOC_Os01g59350 LOC_Os01g07880
Downstream Genes	LOC_Os06g50310 LOC_Os09g31390 LOC_Os11g05640 LOC_Os05g34050 LOC_Os07g44950 LOC_Os06g39960 LOC_Os02g10860 LOC_Os04g47330

miRNA Regulations
miRNAs	osa-miR5517

Reference
PubMed	18236009 16977424 17604002 18065552 21055780

Database Links
Gramene	LOC_Os01g64000.1
Rice Genome Annotation	LOC_Os01g64000.1
Ricechip	LOC_Os01g64000.1
KEGG	osa:4325061 dosa:Os01t0859300-01
Entrez-Gene	4325061