RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g64280.1 View Network Show in Genome Browser |
| Other Names | Os01g0862300 |
| Description | sorting nexin 1, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 37315291-37320517 Nucleotide Length: 1200 |
| Protein-coding | LOC_Os01g64280 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0009606 | tropism | Biological Process | IEA | |
| GO:0008289 | lipid binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005768 | endosome | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g36870 LOC_Os01g12880 LOC_Os01g51120 LOC_Os01g37980 LOC_Os01g12650 LOC_Os01g53520 |
| Downstream Genes | LOC_Os06g43560 LOC_Os05g50660 LOC_Os03g58840 LOC_Os03g06960 LOC_Os07g09600 LOC_Os11g06040 LOC_Os06g14470 LOC_Os03g58700 LOC_Os06g43570 LOC_Os08g17600 LOC_Os02g02720 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR396e-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g64280.1 |
| Rice Genome Annotation | LOC_Os01g64280.1 |
| Ricechip | LOC_Os01g64280.1 |
| KEGG | osa:4324745 dosa:Os01t0862300-01 |
| Entrez-Gene | 4324745 |