RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g64560.1 View Network Show in Genome Browser |
| Other Names | Os01g0865600 |
| Description | helix-loop-helix DNA-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 37457453-37463751 Nucleotide Length: 2715 |
| Protein-coding | LOC_Os01g64560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g01390 LOC_Os01g34330 LOC_Os01g54100 LOC_Os01g50849 |
| Downstream Genes | LOC_Os03g05690 LOC_Os04g42320 LOC_Os08g12430 LOC_Os05g38810 LOC_Os09g07360 LOC_Os04g34720 LOC_Os10g16640 LOC_Os03g14980 LOC_Os04g52380 LOC_Os03g58070 LOC_Os03g36110 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g64560.1 |
| Rice Genome Annotation | LOC_Os01g64560.1 |
| Ricechip | LOC_Os01g64560.1 |
| KEGG | osa:4324795 dosa:Os01t0865600-01 |
| Entrez-Gene | 4324795 |