RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g65450.2 View Network Show in Genome Browser |
| Other Names | Os01g0875400 |
| Description | ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 37986809-37991795 Nucleotide Length: 1023 |
| Protein-coding | LOC_Os01g65450 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g55700 LOC_Os01g61640 LOC_Os01g63820 |
| Downstream Genes | LOC_Os11g31890 LOC_Os05g11570 LOC_Os02g42600 LOC_Os05g43770 LOC_Os05g32430 LOC_Os06g48640 LOC_Os09g15750 LOC_Os02g05340 LOC_Os05g22260 LOC_Os05g51140 LOC_Os02g55270 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR815a osa-miR815b osa-miR815c |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g65450.2 |
| Rice Genome Annotation | LOC_Os01g65450.2 |
| Ricechip | LOC_Os01g65450.2 |
| KEGG | osa:4324776 dosa:Os01t0875400-01 |
| Entrez-Gene | 4324776 |