RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g66030.1 View Network Show in Genome Browser |
| Other Names | Os01g0883100 |
| Description | OsMADS2 - MADS-box family gene with MIKCc type-box, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 38320785-38324074 Nucleotide Length: 630 |
| Protein-coding | LOC_Os01g66030 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g66020 LOC_Os01g55040 |
| Downstream Genes | LOC_Os07g01820 LOC_Os11g40100 LOC_Os03g54160 LOC_Os12g31350 LOC_Os11g10100 LOC_Os09g12800 LOC_Os07g19560 LOC_Os06g08380 LOC_Os07g37510 LOC_Os04g53930 LOC_Os06g27890 More.. |
| Reference | |
|---|---|
| PubMed | 17409064 17640358 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g66030.1 |
| Rice Genome Annotation | LOC_Os01g66030.1 |
| Ricechip | LOC_Os01g66030.1 |
| KEGG | osa:4325001 dosa:Os01t0883100-01 |
| Entrez-Gene | 4325001 |