RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g67960.1 View Network Show in Genome Browser |
| Other Names | Os01g0907300 |
| Description | GPI transamidase component PIG-S-related, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 39486932-39492099 Nucleotide Length: 1851 |
| Protein-coding | LOC_Os01g67960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48980 LOC_Os01g64990 LOC_Os01g13350 LOC_Os01g40470 |
| Downstream Genes | LOC_Os02g46350 LOC_Os11g28980 LOC_Os02g12740 LOC_Os10g08940 LOC_Os07g40510 LOC_Os06g19680 LOC_Os10g34750 LOC_Os02g38920 LOC_Os03g12460 LOC_Os11g34360 LOC_Os03g21690 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 osa-miR1858a osa-miR1858b |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g67960.1 |
| Rice Genome Annotation | LOC_Os01g67960.1 |
| Ricechip | LOC_Os01g67960.1 |
| KEGG | osa:4324979 dosa:Os01t0907300-02 |
| Entrez-Gene | 4324979 |