RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g70170.1 View Network Show in Genome Browser |
| Other Names | Os01g0926300 |
| Description | transaldolase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 40610513-40613463 Nucleotide Length: 1299 |
| Protein-coding | LOC_Os01g70170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g61550 LOC_Os01g58610 |
| Downstream Genes | LOC_Os08g05830 LOC_Os03g11540 LOC_Os03g29950 LOC_Os02g38840 LOC_Os04g40874 LOC_Os03g20300 LOC_Os07g22350 LOC_Os08g43370 LOC_Os09g35970 LOC_Os03g30300 LOC_Os07g41280 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00030 rn01100 rn01110 rn01120 |
| Metacyc Pathways | P124-PWY NONOXIPENT-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g70170.1 |
| Rice Genome Annotation | LOC_Os01g70170.1 |
| Ricechip | LOC_Os01g70170.1 |
| KEGG | osa:4327239 dosa:Os01t0926300-01 |
| Entrez-Gene | 4327239 |