RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g71190.1 View Network Show in Genome Browser |
| Other Names | Os01g0938100 |
| Description | photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 41186974-41188839 Nucleotide Length: 543 |
| Protein-coding | LOC_Os01g71190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g69950 LOC_Os01g43070 LOC_Os01g54870 LOC_Os01g22520 LOC_Os01g46070 LOC_Os01g61120 LOC_Os01g40310 LOC_Os01g47660 LOC_Os01g69080 LOC_Os01g54020 |
| Downstream Genes | LOC_Os04g38750 LOC_Os12g02380 LOC_Os11g02450 LOC_Os07g06450 LOC_Os03g39830 LOC_Os12g17910 LOC_Os04g23820 LOC_Os12g08730 LOC_Os03g21560 LOC_Os03g21900 LOC_Os02g51020 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g71190.1 |
| Rice Genome Annotation | LOC_Os01g71190.1 |
| Ricechip | LOC_Os01g71190.1 |
| KEGG | osa:4326537 dosa:Os01t0938100-01 |
| Entrez-Gene | 4326537 |