RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g72370.1 View Network Show in Genome Browser |
| Other Names | Os01g0952800 |
| Description | helix-loop-helix DNA-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 41971514-41978408 Nucleotide Length: 747 |
| Protein-coding | LOC_Os01g72370 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g72360 LOC_Os01g38980 LOC_Os01g58310 LOC_Os01g61080 |
| Downstream Genes | LOC_Os03g19420 LOC_Os10g02040 LOC_Os07g15460 LOC_Os08g37660 LOC_Os03g22770 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR437 osa-miR5161 |
| Reference | |
|---|---|
| PubMed | 16887895 21331630 17559517 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g72370.1 |
| Rice Genome Annotation | LOC_Os01g72370.1 |
| Ricechip | LOC_Os01g72370.1 |
| KEGG | osa:4325750 dosa:Os01t0952800-01 |
| Entrez-Gene | 4325750 |