RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g72800.1 View Network Show in Genome Browser |
| Other Names | Os01g0958100 |
| Description | signal recognition particle receptor, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 42234584-42237458 Nucleotide Length: 1092 |
| Protein-coding | LOC_Os01g72800 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g67740 LOC_Os01g69950 LOC_Os01g70020 LOC_Os01g56600 LOC_Os01g53700 LOC_Os01g50930 LOC_Os01g51390 LOC_Os01g37825 LOC_Os01g59510 LOC_Os01g68120 LOC_Os01g68380 More.. |
| Downstream Genes | LOC_Os03g52640 LOC_Os02g04050 LOC_Os02g04040 LOC_Os05g41750 LOC_Os12g44390 LOC_Os11g05552 LOC_Os02g04080 LOC_Os02g04060 LOC_Os03g20100 LOC_Os03g40010 LOC_Os08g40610 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn01100 |
| Metacyc Pathways | PWY0-163 P1-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g72800.1 |
| Rice Genome Annotation | LOC_Os01g72800.1 |
| Ricechip | LOC_Os01g72800.1 |
| KEGG | osa:4325387 dosa:Os01t0958100-01 |
| Entrez-Gene | 4325387 |