RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g72940.1 View Network Show in Genome Browser |
| Other Names | Os01g0959800 |
| Description | phosphatidylserine decarboxylase, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 42303454-42311177 Nucleotide Length: 1854 |
| Protein-coding | LOC_Os01g72940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g40250 LOC_Os01g60340 LOC_Os01g16000 LOC_Os01g56620 LOC_Os01g72880 LOC_Os01g53680 LOC_Os01g38970 |
| Downstream Genes | LOC_Os03g01216 LOC_Os03g51430 LOC_Os04g23830 LOC_Os02g26660 LOC_Os04g31270 LOC_Os09g36770 LOC_Os04g55220 LOC_Os02g25060 LOC_Os07g10250 LOC_Os07g34520 LOC_Os04g43650 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00564 rn01100 rn00860 rn01110 |
| Metacyc Pathways | PHOSLIPSYN2-PWY PHOSLIPSYN-PWY PWY-5188 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g72940.1 |
| Rice Genome Annotation | LOC_Os01g72940.1 |
| Ricechip | LOC_Os01g72940.1 |
| KEGG | osa:4325237 dosa:Os01t0959800-01 |
| Entrez-Gene | 4325237 |