RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g72980.2 View Network Show in Genome Browser |
| Other Names | Os01g0960300 |
| Description | tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 42329246-42335754 Nucleotide Length: 1875 |
| Protein-coding | LOC_Os01g72980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g22520 LOC_Os01g39010 LOC_Os01g59060 LOC_Os01g49190 LOC_Os01g58000 LOC_Os01g59490 LOC_Os01g51320 LOC_Os01g27050 LOC_Os01g48960 LOC_Os01g13310 LOC_Os01g08350 More.. |
| Downstream Genes | LOC_Os08g31460 LOC_Os05g06750 LOC_Os10g37690 LOC_Os03g02480 LOC_Os03g62750 LOC_Os06g02980 LOC_Os10g17280 LOC_Os05g47980 LOC_Os03g55874 LOC_Os05g05950 LOC_Os07g32880 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5506 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g72980.2 |
| Rice Genome Annotation | LOC_Os01g72980.2 |
| Ricechip | LOC_Os01g72980.2 |
| KEGG | osa:4325242 dosa:Os01t0960300-01 |
| Entrez-Gene | 4325242 |