RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os01g73880.1 View Network Show in Genome Browser |
| Other Names | Os01g0970400 |
| Description | eukaryotic translation initiation factor, putative, expressed |
| Gene Attributes | Chromosome: Chr1 CDS Coordinates (5'-3'): 42811928-42815290 Nucleotide Length: 684 |
| Protein-coding | LOC_Os01g73880 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g54870 LOC_Os01g25610 LOC_Os01g47660 LOC_Os01g16890 LOC_Os01g61814 LOC_Os01g67134 LOC_Os01g10820 LOC_Os01g48770 LOC_Os01g24690 LOC_Os01g72890 LOC_Os01g59990 More.. |
| Downstream Genes | LOC_Os07g36940 LOC_Os09g02700 LOC_Os06g48750 LOC_Os02g05330 LOC_Os08g22354 LOC_Os11g24610 LOC_Os04g42270 LOC_Os03g22340 LOC_Os02g27760 LOC_Os07g10720 LOC_Os02g01560 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5818 |
| Database Links | |
|---|---|
| Gramene | LOC_Os01g73880.1 |
| Rice Genome Annotation | LOC_Os01g73880.1 |
| Ricechip | LOC_Os01g73880.1 |
| KEGG | dosa:Os01t0970400-01 |
| Entrez-Gene | 4323837 |