RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g01332.1 View Network Show in Genome Browser |
| Other Names | Os02g0103700 |
| Description | ribosomal protein L6, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 180320-183442 Nucleotide Length: 579 |
| Protein-coding | LOC_Os02g01332 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g10820 LOC_Os01g64090 LOC_Os01g54870 LOC_Os01g25610 LOC_Os01g67134 LOC_Os01g61814 LOC_Os01g49290 LOC_Os01g59990 LOC_Os01g47660 LOC_Os01g22490 LOC_Os01g16890 More.. |
| Downstream Genes | LOC_Os03g04750 LOC_Os10g32820 LOC_Os03g40180 LOC_Os05g19370 LOC_Os02g14059 LOC_Os07g10720 LOC_Os06g35730 LOC_Os05g11710 LOC_Os02g27760 LOC_Os04g52361 LOC_Os07g05580 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3979-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g01332.1 |
| Rice Genome Annotation | LOC_Os02g01332.1 |
| Ricechip | LOC_Os02g01332.1 |
| KEGG | osa:4327999 dosa:Os02t0103700-01 |
| Entrez-Gene | 4327999 |