RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g01940.1 View Network Show in Genome Browser |
| Other Names | Os02g0109501,Os02g0109400 |
| Description | transcription factor jumonji, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 509377-517148 Nucleotide Length: 2994 |
| Protein-coding | LOC_Os02g01940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g36630 LOC_Os01g08820 LOC_Os01g67970 |
| Downstream Genes | LOC_Os02g39790 LOC_Os04g42090 LOC_Os09g25620 LOC_Os05g10770 LOC_Os03g05680 LOC_Os10g39620 LOC_Os05g23670 LOC_Os12g18150 LOC_Os09g25430 LOC_Os09g34910 LOC_Os08g29650 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444b.2 osa-miR444c.2 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g01940.1 |
| Rice Genome Annotation | LOC_Os02g01940.1 |
| Ricechip | LOC_Os02g01940.1 |
| KEGG | osa:4328036 dosa:Os02t0109501-00dosa:Os02t0109400-00 |
| Entrez-Gene | 4335962 |