RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g02820.1 View Network Show in Genome Browser |
| Other Names | Os02g0120500 |
| Description | helix-loop-helix DNA-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 1073551-1076776 Nucleotide Length: 1659 |
| Protein-coding | LOC_Os02g02820 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g03520 |
| Downstream Genes | LOC_Os02g56740 LOC_Os06g21390 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR6249a osa-miR6249b |
| Reference | |
|---|---|
| PubMed | 23385589 19808807 20590996 19825565 17138695 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g02820.1 |
| Rice Genome Annotation | LOC_Os02g02820.1 |
| Ricechip | LOC_Os02g02820.1 |
| KEGG | osa:4328113 dosa:Os02t0120500-01 |
| Entrez-Gene | 4328113 |