RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g02960.2 View Network Show in Genome Browser |
| Other Names | Os02g0122000 |
| Description | histone deacetylase complex subunit SAP18, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 1158885-1161278 Nucleotide Length: 459 |
| Protein-coding | LOC_Os02g02960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g58420 LOC_Os01g68324 LOC_Os01g01700 LOC_Os01g22010 LOC_Os01g18860 LOC_Os01g15310 LOC_Os02g01250 LOC_Os01g17279 |
| Downstream Genes | LOC_Os06g38470 LOC_Os08g44450 LOC_Os05g41780 LOC_Os02g09650 LOC_Os05g06840 LOC_Os07g10830 LOC_Os06g48750 LOC_Os04g23820 LOC_Os04g42600 LOC_Os07g10250 LOC_Os02g12580 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g02960.2 |
| Rice Genome Annotation | LOC_Os02g02960.2 |
| Ricechip | LOC_Os02g02960.2 |
| KEGG | osa:4328127 dosa:Os02t0122000-01 |
| Entrez-Gene | 4328127 |