RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g03460.1 View Network Show in Genome Browser |
| Other Names | |
| Description | phosphatidate cytidylyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 1406098-1409346 Nucleotide Length: 1089 |
| Protein-coding | LOC_Os02g03460 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g63830 LOC_Os01g73450 LOC_Os01g54900 LOC_Os01g52400 |
| Downstream Genes | LOC_Os04g41300 LOC_Os07g38300 LOC_Os03g38230 LOC_Os06g07120 LOC_Os07g41680 LOC_Os04g33300 LOC_Os02g24612 LOC_Os12g35630 LOC_Os08g25290 LOC_Os02g05400 LOC_Os08g12840 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00564 rn01100 |
| Metacyc Pathways | PHOSLIPSYN2-PWY PHOSLIPSYN-PWY PWY-5269 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g03460.1 |
| Rice Genome Annotation | LOC_Os02g03460.1 |
| Ricechip | LOC_Os02g03460.1 |