RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g03740.1 View Network Show in Genome Browser |
| Other Names | Os02g0130100 |
| Description | pyridoxal biosynthesis protein PDX2, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 1566087-1569573 Nucleotide Length: 768 |
| Protein-coding | LOC_Os02g03740 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g39280 LOC_Os01g43090 LOC_Os01g66180 |
| Downstream Genes | LOC_Os10g01080 LOC_Os07g01020 LOC_Os11g48080 LOC_Os10g11520 LOC_Os10g08960 LOC_Os05g18780 LOC_Os10g08220 LOC_Os04g27060 LOC_Os04g26910 LOC_Os04g26870 LOC_Os03g15120 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 |
| Metacyc Pathways | DENOVOPURINE2-PWY PWY-841 ANAEROFRUCAT-PWY PWY-1042 PWY-3801 GLYCOLYSIS |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g03740.1 |
| Rice Genome Annotation | LOC_Os02g03740.1 |
| Ricechip | LOC_Os02g03740.1 |
| KEGG | osa:4328188 dosa:Os02t0130100-01 |
| Entrez-Gene | 4328188 |