RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g03960.1 View Network Show in Genome Browser |
| Other Names | Os02g0132500 |
| Description | CPuORF1 - conserved peptide uORF-containing transcript, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 1695454-1697219 Nucleotide Length: 492 |
| Protein-coding | LOC_Os02g03960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59350 LOC_Os01g64730 LOC_Os01g64020 |
| Downstream Genes | LOC_Os04g54474 LOC_Os09g29820 LOC_Os07g08420 LOC_Os06g45140 LOC_Os03g58250 LOC_Os02g49560 LOC_Os02g16680 LOC_Os02g07840 LOC_Os06g50310 LOC_Os06g41770 |
| Reference | |
|---|---|
| PubMed | 18065552 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g03960.1 |
| Rice Genome Annotation | LOC_Os02g03960.1 |
| Ricechip | LOC_Os02g03960.1 |
| KEGG | osa:4328205 dosa:Os02t0132500-01 |
| Entrez-Gene | 4328205 |