RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g05410.1 View Network Show in Genome Browser |
| Other Names | Os02g0147300 |
| Description | splicing factor 3B subunit 1, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 2599191-2604033 Nucleotide Length: 2451 |
| Protein-coding | LOC_Os02g05410 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g04480 LOC_Os02g01250 LOC_Os02g01740 LOC_Os01g15860 LOC_Os01g73604 LOC_Os01g15310 LOC_Os01g63890 LOC_Os01g72890 LOC_Os01g49270 LOC_Os02g03440 LOC_Os02g02510 More.. |
| Downstream Genes | LOC_Os02g58090 LOC_Os03g15700 LOC_Os02g14780 LOC_Os02g13990 LOC_Os03g50850 LOC_Os03g13760 LOC_Os05g24970 LOC_Os10g31900 LOC_Os09g02700 LOC_Os05g07050 LOC_Os03g21990 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444b.2 osa-miR444c.2 osa-miR444f |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g05410.1 |
| Rice Genome Annotation | LOC_Os02g05410.1 |
| Ricechip | LOC_Os02g05410.1 |
| KEGG | osa:4328291 dosa:Os02t0147300-01 |
| Entrez-Gene | 4328291 |