RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g05450.1 View Network Show in Genome Browser |
| Other Names | Os02g0147800 |
| Description | Homeobox domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 2620369-2626310 Nucleotide Length: 2046 |
| Protein-coding | LOC_Os02g05450 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g65600 LOC_Os01g66420 LOC_Os02g03030 LOC_Os01g73460 |
| Downstream Genes | LOC_Os12g34330 LOC_Os12g24540 LOC_Os11g14010 LOC_Os07g41740 LOC_Os07g12910 LOC_Os07g07690 LOC_Os06g51450 LOC_Os06g20410 LOC_Os04g14510 LOC_Os03g53700 LOC_Os03g50780 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g05450.1 |
| Rice Genome Annotation | LOC_Os02g05450.1 |
| Ricechip | LOC_Os02g05450.1 |
| KEGG | osa:4328295 dosa:Os02t0147800-02 |
| Entrez-Gene | 4328295 |