RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g05830.1 View Network Show in Genome Browser |
| Other Names | Os02g0152400 |
| Description | ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 2874934-2876452 Nucleotide Length: 705 |
| Protein-coding | LOC_Os02g05830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g58020 LOC_Os01g55560 |
| Downstream Genes | LOC_Os05g35330 LOC_Os11g32770 LOC_Os12g10580 LOC_Os02g16660 LOC_Os07g38230 LOC_Os03g59320 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00630 rn01100 rn01110 rn00710 rn01120 |
| Metacyc Pathways | PWY-5532 CALVIN-PWY PWY-5723 |
| Reference | |
|---|---|
| PubMed | 21951138 17379698 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g05830.1 |
| Rice Genome Annotation | LOC_Os02g05830.1 |
| Ricechip | LOC_Os02g05830.1 |
| KEGG | osa:4328326 dosa:Os02t0152400-01 |
| Entrez-Gene | 4328326 |