RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g06340.1 View Network Show in Genome Browser |
| Other Names | Os02g0158100 |
| Description | EH domain-containing protein 1, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 3166574-3170816 Nucleotide Length: 1632 |
| Protein-coding | LOC_Os02g06340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005768 | endosome | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g70560 LOC_Os01g08150 LOC_Os01g27730 LOC_Os02g01440 LOC_Os01g50010 LOC_Os01g69130 LOC_Os01g25880 LOC_Os01g12650 LOC_Os01g53520 LOC_Os01g16650 LOC_Os01g50770 More.. |
| Downstream Genes | LOC_Os02g56540 LOC_Os03g56900 LOC_Os07g01490 LOC_Os08g40170 LOC_Os04g30720 LOC_Os12g02710 LOC_Os11g02740 LOC_Os07g04910 LOC_Os03g39020 LOC_Os10g42660 LOC_Os05g47550 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g06340.1 |
| Rice Genome Annotation | LOC_Os02g06340.1 |
| Ricechip | LOC_Os02g06340.1 |
| KEGG | osa:4328363 dosa:Os02t0158100-01 |
| Entrez-Gene | 4328363 |