RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g07040.1 View Network Show in Genome Browser |
| Other Names | Os02g0167000 |
| Description | biotin--protein ligase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 3607089-3610234 Nucleotide Length: 1128 |
| Protein-coding | LOC_Os02g07040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g04660 LOC_Os01g55870 LOC_Os01g27160 LOC_Os01g27150 LOC_Os01g33960 LOC_Os01g47330 |
| Downstream Genes | LOC_Os03g20560 LOC_Os12g40450 LOC_Os11g39670 LOC_Os09g26180 LOC_Os11g29400 LOC_Os06g02144 LOC_Os09g30418 LOC_Os09g30412 LOC_Os09g32680 LOC_Os03g13800 LOC_Os08g39140 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY0-1264 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g07040.1 |
| Rice Genome Annotation | LOC_Os02g07040.1 |
| Ricechip | LOC_Os02g07040.1 |
| KEGG | osa:4328417 dosa:Os02t0167000-00 |
| Entrez-Gene | 4328417 |