RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g07230.1 View Network Show in Genome Browser |
| Other Names | Os02g0168800 |
| Description | porphobilinogen deaminase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 3715275-3718267 Nucleotide Length: 1077 |
| Protein-coding | LOC_Os02g07230 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48690 LOC_Os01g53450 LOC_Os01g57460 LOC_Os01g43390 LOC_Os01g59060 LOC_Os01g19140 LOC_Os01g42234 LOC_Os01g23740 LOC_Os01g71720 LOC_Os01g33030 LOC_Os01g71700 More.. |
| Downstream Genes | LOC_Os03g08730 LOC_Os06g22690 LOC_Os10g35840 LOC_Os11g02450 LOC_Os06g49110 LOC_Os03g17580 LOC_Os12g17910 LOC_Os08g41990 LOC_Os03g49710 LOC_Os10g41150 LOC_Os09g10760 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | PWY-5188 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g07230.1 |
| Rice Genome Annotation | LOC_Os02g07230.1 |
| Ricechip | LOC_Os02g07230.1 |
| KEGG | osa:4328432 dosa:Os02t0168800-01 |
| Entrez-Gene | 4328432 |