RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g07890.2 View Network Show in Genome Browser |
| Other Names | Os02g0175600 |
| Description | 60S ribosomal protein L27a-3, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 4134903-4135672 Nucleotide Length: 435 |
| Protein-coding | LOC_Os02g07890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g60790 LOC_Os01g61814 LOC_Os01g59990 LOC_Os01g54870 LOC_Os01g67134 LOC_Os01g19840 LOC_Os01g04730 LOC_Os01g25610 LOC_Os02g01560 LOC_Os01g59730 LOC_Os01g51020 More.. |
| Downstream Genes | LOC_Os03g59310 LOC_Os05g39960 LOC_Os07g10660 LOC_Os08g03640 LOC_Os06g02510 LOC_Os03g38000 LOC_Os12g38000 LOC_Os05g48310 LOC_Os05g48220 LOC_Os11g04070 LOC_Os12g03880 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1846a-5p osa-miR1846b-5p osa-miR1846c-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g07890.2 |
| Rice Genome Annotation | LOC_Os02g07890.2 |
| Ricechip | LOC_Os02g07890.2 |
| KEGG | osa:4328472 dosa:Os02t0175600-01 |
| Entrez-Gene | 4328472 |