RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g08100.1 View Network Show in Genome Browser |
| Other Names | Os02g0177600 |
| Description | AMP-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 4280499-4285931 Nucleotide Length: 1665 |
| Protein-coding | LOC_Os02g08100 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g65900 LOC_Os01g38229 LOC_Os01g55110 |
| Downstream Genes | LOC_Os07g32670 LOC_Os03g59080 LOC_Os12g04150 LOC_Os07g34520 LOC_Os06g15760 LOC_Os03g02190 LOC_Os07g32890 LOC_Os05g25640 LOC_Os10g30100 LOC_Os03g06190 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2927 osa-miR5488 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00130 rn00360 rn00940 rn01100 rn01110 |
| Metacyc Pathways | PWY1F-FLAVSYN PWY-361 PWY-5754 PWY-6435 PWY-6673 PWY-6320 PWY-1121 PWY-5135 |
| Reference | |
|---|---|
| PubMed | 21807887 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g08100.1 |
| Rice Genome Annotation | LOC_Os02g08100.1 |
| Ricechip | LOC_Os02g08100.1 |
| KEGG | osa:4328485 dosa:Os02t0177600-01 |
| Entrez-Gene | 4328485 |