RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g08270.1 View Network Show in Genome Browser |
| Other Names | Os02g0179200 |
| Description | class I glutamine amidotransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 4390133-4393564 Nucleotide Length: 900 |
| Protein-coding | LOC_Os02g08270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g43020 LOC_Os01g46570 |
| Downstream Genes | LOC_Os06g48620 LOC_Os03g50880 LOC_Os12g36950 LOC_Os03g15120 LOC_Os06g12690 LOC_Os03g05720 LOC_Os04g40830 LOC_Os03g18550 LOC_Os05g33260 LOC_Os11g34860 LOC_Os06g43680 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2098-5p osa-miR5075 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 rn00230 |
| Metacyc Pathways | TRPSYN-PWY PWY-6660 PWY-6661 PWY-5958 DENOVOPURINE2-PWY PWY-841 PWY-5043 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g08270.1 |
| Rice Genome Annotation | LOC_Os02g08270.1 |
| Ricechip | LOC_Os02g08270.1 |
| KEGG | osa:4328499 dosa:Os02t0179200-01 |
| Entrez-Gene | 4328499 |