RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g09750.1 View Network Show in Genome Browser |
| Other Names | Os02g0190600 |
| Description | lycopene beta cyclase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 5028562-5030420 Nucleotide Length: 1470 |
| Protein-coding | LOC_Os02g09750 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g68330 LOC_Os01g62070 |
| Downstream Genes | LOC_Os09g39560 LOC_Os09g04440 LOC_Os12g01449 LOC_Os09g17620 LOC_Os11g01439 LOC_Os05g49380 LOC_Os02g19150 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00627 rn01120 rn00363 rn00624 rn00945 rn01110 rn00903 rn00600 rn01100 rn00905 |
| Reference | |
|---|---|
| PubMed | 18208525 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g09750.1 |
| Rice Genome Annotation | LOC_Os02g09750.1 |
| Ricechip | LOC_Os02g09750.1 |
| KEGG | osa:4328572 dosa:Os02t0190600-00 |
| Entrez-Gene | 4328572 |