RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g11890.1 View Network Show in Genome Browser |
| Other Names | Os02g0209900 |
| Description | syntaxin-related protein, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 6158238-6159991 Nucleotide Length: 936 |
| Protein-coding | LOC_Os02g11890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g61780 LOC_Os02g02720 LOC_Os01g73230 LOC_Os02g03410 LOC_Os01g61590 LOC_Os01g59360 LOC_Os01g43410 LOC_Os01g57370 LOC_Os02g10510 LOC_Os01g69230 |
| Downstream Genes | LOC_Os02g25580 LOC_Os06g04450 LOC_Os04g18030 LOC_Os05g26890 LOC_Os10g10500 LOC_Os03g14690 LOC_Os10g23090 LOC_Os08g17600 LOC_Os09g11970 LOC_Os11g06740 LOC_Os08g44930 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g11890.1 |
| Rice Genome Annotation | LOC_Os02g11890.1 |
| Ricechip | LOC_Os02g11890.1 |
| KEGG | osa:9272269 dosa:Os02t0209900-01 |
| Entrez-Gene | 9272269 |