RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g12350.1 View Network Show in Genome Browser |
| Other Names | Os02g0214900 |
| Description | histone deacetylase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 6424555-6430620 Nucleotide Length: 1533 |
| Protein-coding | LOC_Os02g12350 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g55200 LOC_Os01g45990 LOC_Os01g11250 LOC_Os02g07830 LOC_Os01g52070 LOC_Os01g27040 LOC_Os01g04870 LOC_Os02g02960 LOC_Os01g01960 LOC_Os01g25370 LOC_Os01g58680 More.. |
| Downstream Genes | LOC_Os08g25200 LOC_Os04g01130 LOC_Os11g34300 LOC_Os03g43890 LOC_Os07g06980 LOC_Os07g38360 LOC_Os06g08480 LOC_Os02g14840 LOC_Os02g56130 LOC_Os12g07720 LOC_Os05g05780 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g12350.1 |
| Rice Genome Annotation | LOC_Os02g12350.1 |
| Ricechip | LOC_Os02g12350.1 |
| KEGG | osa:4328717 dosa:Os02t0214900-02 |
| Entrez-Gene | 4328717 |