RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g12570.1 View Network Show in Genome Browser |
| Other Names | Os02g0217500 |
| Description | pre-mRNA cleavage complex II protein Clp1, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 6568146-6572535 Nucleotide Length: 1299 |
| Protein-coding | LOC_Os02g12570 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g01250 LOC_Os02g02510 LOC_Os01g72890 LOC_Os02g01740 LOC_Os01g56550 LOC_Os02g03440 LOC_Os01g43170 LOC_Os02g05310 LOC_Os02g04480 LOC_Os01g36570 LOC_Os02g07070 More.. |
| Downstream Genes | LOC_Os06g48310 LOC_Os03g63590 LOC_Os11g16540 LOC_Os12g38380 LOC_Os03g17010 LOC_Os03g13760 LOC_Os04g18010 LOC_Os06g13999 LOC_Os06g13839 LOC_Os06g21470 LOC_Os02g13990 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g12570.1 |
| Rice Genome Annotation | LOC_Os02g12570.1 |
| Ricechip | LOC_Os02g12570.1 |
| KEGG | osa:4328733 dosa:Os02t0217500-01 |
| Entrez-Gene | 4328733 |