RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g13840.1 View Network Show in Genome Browser |
| Other Names | Os02g0232400 |
| Description | citrate synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 7491165-7497891 Nucleotide Length: 1503 |
| Protein-coding | LOC_Os02g13840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g01500 LOC_Os01g19450 LOC_Os01g09000 LOC_Os01g54900 |
| Downstream Genes | LOC_Os08g02640 LOC_Os09g20440 LOC_Os07g04240 LOC_Os04g32020 LOC_Os07g49520 LOC_Os02g31040 LOC_Os06g01630 LOC_Os06g30460 LOC_Os04g32330 LOC_Os07g22720 LOC_Os11g47120 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00020 rn00630 rn01100 rn01110 rn01120 rn01210 |
| Metacyc Pathways | TCA ANARESP1-PWY P105-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g13840.1 |
| Rice Genome Annotation | LOC_Os02g13840.1 |
| Ricechip | LOC_Os02g13840.1 |
| KEGG | osa:4328812 dosa:Os02t0232400-01 |
| Entrez-Gene | 4328812 |