RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g15690.1 View Network Show in Genome Browser |
| Other Names | Os02g0256100 |
| Description | polygalacturonase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 8834023-8837535 Nucleotide Length: 1332 |
| Protein-coding | LOC_Os02g15690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g71170 LOC_Os01g42520 LOC_Os02g10920 LOC_Os01g59870 LOC_Os01g63770 LOC_Os01g52770 LOC_Os01g58550 LOC_Os01g59150 LOC_Os01g55610 |
| Downstream Genes | LOC_Os02g53200 LOC_Os06g05550 LOC_Os03g08790 LOC_Os04g57800 LOC_Os08g39550 LOC_Os04g38570 LOC_Os03g50810 LOC_Os10g19880 LOC_Os04g58840 LOC_Os08g35090 LOC_Os04g44440 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2118p |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-1081 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g15690.1 |
| Rice Genome Annotation | LOC_Os02g15690.1 |
| Ricechip | LOC_Os02g15690.1 |
| KEGG | osa:4328920 dosa:Os02t0256100-01 |
| Entrez-Gene | 4328920 |