RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g15810.1 View Network Show in Genome Browser |
| Other Names | Os02g0258250,Os02g0258200 |
| Description | HMG1/2, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 8935092-8937181 Nucleotide Length: 1515 |
| Protein-coding | LOC_Os02g15810 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59120 LOC_Os01g67110 LOC_Os01g55220 LOC_Os01g70560 LOC_Os01g49680 LOC_Os01g34614 LOC_Os02g03340 LOC_Os01g49200 LOC_Os01g16650 LOC_Os01g04170 LOC_Os02g08440 More.. |
| Downstream Genes | LOC_Os06g06090 LOC_Os03g17700 LOC_Os05g43140 LOC_Os08g06060 LOC_Os10g38950 LOC_Os12g32620 LOC_Os03g15940 LOC_Os08g40170 LOC_Os11g37100 LOC_Os08g44420 LOC_Os08g44410 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g15810.1 |
| Rice Genome Annotation | LOC_Os02g15810.1 |
| Ricechip | LOC_Os02g15810.1 |
| KEGG | osa:4328927 dosa:Os02t0258250-00dosa:Os02t0258200-01 |
| Entrez-Gene | 4338391 |