RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g16540.1 View Network Show in Genome Browser |
| Other Names | Os02g0265200 |
| Description | WRKY39, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 9446492-9448847 Nucleotide Length: 1086 |
| Protein-coding | LOC_Os02g16540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g49120 LOC_Os01g04900 |
| Downstream Genes | LOC_Os10g37400 LOC_Os02g21890 LOC_Os03g11420 LOC_Os08g05490 LOC_Os07g37830 LOC_Os08g23110 LOC_Os12g08140 LOC_Os06g16430 LOC_Os07g11050 LOC_Os02g36840 LOC_Os08g39740 More.. |
| Reference | |
|---|---|
| PubMed | 15618416 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g16540.1 |
| Rice Genome Annotation | LOC_Os02g16540.1 |
| Ricechip | LOC_Os02g16540.1 |
| KEGG | osa:4328953 dosa:Os02t0265200-01 |
| Entrez-Gene | 4328953 |