RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g16630.1 View Network Show in Genome Browser |
| Other Names | Os02g0266000 |
| Description | tryptophan biosynthesis protein trpCF, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 9502442-9505462 Nucleotide Length: 837 |
| Protein-coding | LOC_Os02g16630 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g72240 LOC_Os02g03850 LOC_Os01g27750 LOC_Os01g42410 LOC_Os01g42380 LOC_Os01g24010 LOC_Os01g42350 LOC_Os01g42370 LOC_Os02g11760 LOC_Os01g52560 LOC_Os01g40640 More.. |
| Downstream Genes | LOC_Os07g08430 LOC_Os08g04180 LOC_Os03g58290 LOC_Os03g58320 LOC_Os03g58300 LOC_Os03g58260 LOC_Os06g42560 LOC_Os03g03450 LOC_Os04g39270 LOC_Os12g09290 LOC_Os09g32810 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | TRPSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g16630.1 |
| Rice Genome Annotation | LOC_Os02g16630.1 |
| Ricechip | LOC_Os02g16630.1 |
| KEGG | osa:4328957 dosa:Os02t0266000-01 |
| Entrez-Gene | 4328957 |