RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g17390.1 View Network Show in Genome Browser |
| Other Names | Os02g0274100 |
| Description | 3-hydroxyacyl-CoA dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 10001464-10010228 Nucleotide Length: 2181 |
| Protein-coding | LOC_Os02g17390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g50820 LOC_Os01g39270 LOC_Os02g07490 |
| Downstream Genes | LOC_Os05g45300 LOC_Os12g25690 LOC_Os02g57260 LOC_Os10g35470 LOC_Os10g27340 LOC_Os04g40990 LOC_Os10g37210 LOC_Os03g12110 LOC_Os10g31950 LOC_Os04g46560 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00410 rn00640 rn00720 rn01100 rn01120 rn00280 rn01110 rn00071 rn00310 rn00362 rn00380 rn00627 rn00650 rn00062 rn00360 rn00930 rn00281 rn00903 rn00592 |
| Metacyc Pathways | P3-PWY P127-PWY CENTFERM-PWY PWY-5177 PWY-5136 FAO-PWY PWY-5138 PWY-3941 VALDEG-PWY ILEUDEG-PWY PWY-5080 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g17390.1 |
| Rice Genome Annotation | LOC_Os02g17390.1 |
| Ricechip | LOC_Os02g17390.1 |
| KEGG | osa:4328997 dosa:Os02t0274100-01 |
| Entrez-Gene | 4328997 |